This course covers physical, mathematical and simulation aspects of single and two-phase flow and transport through porous media. Conservation equations for multiphase, multicomponent flow. Modeling of fluid mechanical instabilities such as viscous fingering, gravity fingering and gravity-driven convection. Coupling fluid flow with chemical reactions. Coupling single phase flow with poromechanics. Numerical methods for elliptic equations: finite volume methods, two-point flux approximations, finite difference, spectral method. Numerical methods for hyperbolic equations: high-order explicit methods, implicit method. Applications in hydrology, geological CO2 sequestration and induced seismicity, among others will be demonstrated.